{"id":678,"date":"2021-05-25T15:09:46","date_gmt":"2021-05-25T13:09:46","guid":{"rendered":"http:\/\/forms.leibniz-zmt.de\/Wordpress\/?page_id=678"},"modified":"2022-01-28T14:03:22","modified_gmt":"2022-01-28T13:03:22","slug":"genomics-an-introduction-to-genome-sequencing-data-processing-and-analysis","status":"publish","type":"page","link":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/?page_id=678","title":{"rendered":"2021 Registration Genomics \u2013 an introduction to genome sequencing, data processing and analysis"},"content":{"rendered":"\n<p><strong>Date: <\/strong>July 06th and 07th, 2021<\/p>\n\n\n\n<p><strong>Time:<\/strong> 14:00\u201316:00 CEST<\/p>\n\n\n\n<p><strong>Instructor: <\/strong>Martin Helmkampf<\/p>\n\n\n\n<p><strong>Course description:<\/strong> This course will give a broad overview over the basics of genome research. The first session will cover planning a genome project, next-generation sequencing technologies, and the basic workflow. Practical exercises include an introduction to the command line and how to process raw read data using bioinformatic tools. The second day focuses on genome assembly and annotation, and will provide a general discussion of best practices regarding data management and sharing.<\/p>\n\n\n\n<p><strong>Target Group:<\/strong> The course is for all ZMT Alumni and Doctoral Candidates at ZMT. Guest researchers and interested Postdocs can participate as well.<\/p>\n\n\n\n<div style=\"display:none\" class=\"fm-form-container fm-theme1\"><div id=\"fm-pages81\" class=\"fm-pages wdform_page_navigation \" show_title=\"\" show_numbers=\"1\" type=\"none\"><\/div><form name=\"form81\" action=\"\/Wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fpages%2F678\" method=\"post\" id=\"form81\" class=\"fm-form form81  \" enctype=\"multipart\/form-data\"><input type=\"hidden\" id=\"counter81\" value=\"15\" name=\"counter81\" \/><input type=\"hidden\" id=\"Itemid81\" value=\"\" name=\"Itemid81\" \/><input type=\"hidden\" id=\"fm_shake81\" value=\"1\" name=\"fm_shake81\" \/><input type=\"text\" class=\"fm-hide\" id=\"fm_empty_field_validation81\" value=\"\" name=\"fm_empty_field_validation81\" data-value=\"bd736efb144d599cf463541431fbf5c4\" \/><div class=\"fm-header-bg\"><div class=\"fm-header \"><div class=\"fm-header-text\">          <div class=\"fm-header-title\">            Genomics \u2013 an introduction to genome sequencing, data processing and analysis          <\/div>          <div class=\"fm-header-description\">                      <\/div>        <\/div><\/div><\/div><div class=\"wdform-page-and-images fm-form-builder\"><div id=\"81form_view1\" class=\"wdform_page\" page_title=\"Untitled page\" next_title=\"Next\" next_type=\"text\" next_class=\"wdform-page-button\" next_checkable=\"false\" previous_title=\"Previous\" previous_type=\"text\" previous_class=\"wdform-page-button\" previous_checkable=\"false\"><div class=\"wdform_section fm-col-1\"><div class=\"wdform_column\"><div wdid=\"2\" class=\"wdform_row\"><div type=\"type_text\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_text\" ><div class=\"wdform-label-section wd-width-100  wd-flex-row wd-align-items-center\">    <label  for=\"wdform_2_element81\" class=\"wdform-label\">First Name<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-row wd-align-items-center wd-width-100\" ><input type=\"text\"                           class=\"wd-width-100\"                           id=\"wdform_2_element81\"                           name=\"wdform_2_element81\"                           value=\"\"                           title=\"\"                           placeholder=\"\"                                                       \/><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"3\" class=\"wdform_row\"><div type=\"type_text\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_text\" ><div class=\"wdform-label-section wd-width-100  wd-flex-row wd-align-items-center\">    <label  for=\"wdform_3_element81\" class=\"wdform-label\">Last Name<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-row wd-align-items-center wd-width-100\" ><input type=\"text\"                           class=\"wd-width-100\"                           id=\"wdform_3_element81\"                           name=\"wdform_3_element81\"                           value=\"\"                           title=\"\"                           placeholder=\"\"                                                       \/><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"12\" class=\"wdform_row\" style=\"position: relative; left: 0px; top: 0px;\"><div type=\"type_submitter_mail\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_submitter_mail\" ><div class=\"wdform-label-section wd-width-100  wd-flex-row\">    <label  for=\"wdform_12_element81\" class=\"wdform-label\">Official Working Email<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-row wd-width-100\" ><input type=\"text\" class=\"wd-width-100\" id=\"wdform_12_element81\" name=\"wdform_12_element81\" value=\"\" title=\"\" placeholder=\"\"   onchange=\"wd_check_email('12', '81', 'This is not a valid email address.')\" \/><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"4\" class=\"wdform_row\"><div type=\"type_radio\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_radio\" ><div class=\"wdform-label-section wd-width-100  wd-flex-wrap wd-flex-column\">    <label  class=\"wdform-label\">Status:<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-wrap wd-flex-column wd-width-100\" ><div class=\"wd-flex wd-flex-column\"><input type=\"hidden\" name=\"wdform_4_element81\" value=\"\" \/><div class=\"radio-div wd-choice wd-flex wd-flex-row\"><input type=\"radio\"  id=\"wdform_4_element810\" name=\"wdform_4_element81\" value=\"PhD\" onclick=\"set_default(&quot;wdform_4&quot;,&quot;0&quot;,&quot;81&quot;); 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top: 0px;\"><div type=\"type_own_select\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_own_select\" ><div class=\"wdform-label-section wd-width-100 wdform_select wd-flex-row\">    <label  for=\"wdform_8_element81\" class=\"wdform-label\">Working Group: <\/label><\/div><div class=\"wdform-element-section wd-flex wdform_select wd-flex-row wd-width-100\" ><select class=\"wd-width-100\" id=\"wdform_8_element81\" name=\"wdform_8_element81\" ><option value=\"Select your group\" selected=\"selected\">Select your group<\/option><option value=\"Biogeochemistry &amp; Geology: WG Ecological Biogeochemistry\" >Biogeochemistry &amp; Geology: WG Ecological Biogeochemistry<\/option><option value=\"Biogeochemistry &amp; Geology: WG Carbon and Nutrient Cycling\" >Biogeochemistry &amp; Geology: WG Carbon and Nutrient Cycling<\/option><option value=\"Biogeochemistry &amp; Geology: WG Geoecology and Carbonate Sedimentology\" >Biogeochemistry &amp; Geology: WG Geoecology and Carbonate Sedimentology<\/option><option value=\"Biogeochemistry &amp; Geology: WG Sea Level and Coastal Changes\" >Biogeochemistry &amp; Geology: WG Sea Level and Coastal Changes<\/option><option value=\"Biogeochemistry &amp; Geology: WG Submarine Groundwater Discharge\" >Biogeochemistry &amp; Geology: WG Submarine Groundwater Discharge<\/option><option value=\"Biogeochemistry &amp; Geology: WG Tropical Marine Microbiology\" >Biogeochemistry &amp; Geology: WG Tropical Marine Microbiology<\/option><option value=\"Ecology: WG Algae and Seagrass Ecology\" >Ecology: WG Algae and Seagrass Ecology<\/option><option value=\"Ecology: WG Experimental Aquaculture\" >Ecology: WG Experimental Aquaculture<\/option><option value=\"Ecology: WG Fisheries Biology\" >Ecology: WG Fisheries Biology<\/option><option value=\"Ecology: WG Human Agency, Resilience and Diversity in Coral Reefs\" >Ecology: WG Human Agency, Resilience and Diversity in Coral Reefs<\/option><option value=\"Ecology: WG Mangrove Ecology\" >Ecology: WG Mangrove Ecology<\/option><option value=\"Ecology: WG Reef Systems\" >Ecology: WG Reef Systems<\/option><option value=\"Social Sciences: WG Development and Knowledge Sociology\" >Social Sciences: WG Development and Knowledge Sociology<\/option><option value=\"Social Sciences: WG Institutional and Behavioural Economics\" >Social Sciences: WG Institutional and Behavioural Economics<\/option><option value=\"Social Sciences: WG Social-Ecological Systems Analysis\" >Social Sciences: WG Social-Ecological Systems Analysis<\/option><option value=\"Theoretical Ecology &amp; Modelling: WG Resource Management\" >Theoretical Ecology &amp; Modelling: WG Resource Management<\/option><option value=\"Theoretical Ecology &amp; Modelling: WG Spatial Ecology and Interactions\" >Theoretical Ecology &amp; Modelling: WG Spatial Ecology and Interactions<\/option><option value=\"Theoretical Ecology &amp; Modelling: WG Systems Ecology\" >Theoretical Ecology &amp; Modelling: WG Systems Ecology<\/option><option value=\"External Participant\" >External Participant<\/option><\/select><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"14\" class=\"wdform_row\" style=\"position: relative; left: 0px; top: 0px;\"><div type=\"type_date_range\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_date_range\" ><div class=\"wdform-label-section wd-width-100  wd-flex-row\">    <label  for=\"wdform_14_element810\" class=\"wdform-label\">If you are an Alumni from ZMT, which time period?<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-row wd-width-100\" ><div class=\"wd-flex wd-flex-row wd-align-items-center wd-width-50\"><input class=\"wd-width-100\" autocomplete=\"off\" type=\"text\" id=\"wdform_14_element810\" name=\"wdform_14_element810\"  onchange=\"change_value_range('wdform_14_element811', 'minDate', this.value, '', 'mm\/dd\/yy')\" \/><span id=\"button_calendar_140\" class=\"dashicons dashicons-calendar-alt wd-calendar-button wd-hidden\"><\/span><\/div><div class=\"wd-flex wd-flex-row wd-align-items-center wd-name-separator\"><\/div><div class=\"wd-flex wd-flex-row wd-align-items-center wd-width-50\"><input class=\"wd-width-100\" autocomplete=\"off\" type=\"text\" id=\"wdform_14_element811\" name=\"wdform_14_element811\"  onchange=\"change_value_range('wdform_14_element810', 'maxDate', this.value, '', 'mm\/dd\/yy')\" \/><span id=\"button_calendar_141\" class=\"dashicons dashicons-calendar-alt wd-calendar-button wd-hidden\"><\/span><\/div><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"10\" class=\"wdform_row\"><div type=\"type_text\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_text\" ><div class=\"wdform-label-section wd-width-100  wd-flex-row wd-align-items-center\">    <label  for=\"wdform_10_element81\" class=\"wdform-label\">Do you have any question or further comment for us?<\/label><\/div><div class=\"wdform-element-section wd-flex  wd-flex-row wd-align-items-center wd-width-100\" ><input type=\"text\"                           class=\"wd-width-100\"                           id=\"wdform_10_element81\"                           name=\"wdform_10_element81\"                           value=\"\"                           title=\"\"                           placeholder=\"\"                                                       \/><\/div><\/div><\/div><\/div><div class=\"wdform_column\"><div wdid=\"1\" class=\"wdform_row\"><div type=\"type_submit_reset\" class=\"wdform-field wd-width-100 wd-flex wd-flex-column fm-type_submit_reset\" ><div class=\"wdform-element-section wd-flex  wd-flex-row wd-justify-content-left wd-width-100\" ><button  type=\"button\" class=\"button-submit\" onclick=\"fm_submit_form('81');\"  data-ajax=\"0\"><span class=\"fm-submit-loading spinner fm-ico-spinner\"><\/span>Submit<\/button><button  type=\"button\" class=\"button-reset wd-hidden\" onclick=\"fm_reset_form(81);\" >Reset<\/button><\/div><\/div><\/div><\/div><\/div><div valign=\"top\" class=\"wdform_footer wd-width-100\"><div class=\"wd-width-100\"><div class=\"wd-width-100 wd-table\" style=\"padding-top:10px;\"><div class=\"wd-table-group\"><div id=\"81page_nav1\" class=\"wd-table-row\"><\/div><\/div><\/div><\/div><\/div><\/div><\/div><div class=\"wdform_preload\"><\/div><\/form><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Date: July 06th and 07th, 2021 Time: 14:00\u201316:00 CEST Instructor: Martin Helmkampf Course description: This course will give a broad overview over the basics of genome research. The first session will cover planning a genome project, next-generation sequencing technologies, and the basic workflow. Practical exercises include an introduction to the command line and how to &hellip; <a href=\"https:\/\/forms.leibniz-zmt.de\/Wordpress\/?page_id=678\" class=\"more-link\">Continue reading<span class=\"screen-reader-text\"> &#8220;2021 Registration Genomics \u2013 an introduction to genome sequencing, data processing and analysis&#8221;<\/span><\/a><\/p>\n","protected":false},"author":15,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"wf_page_folders":[],"class_list":["post-678","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/pages\/678","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/users\/15"}],"replies":[{"embeddable":true,"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=678"}],"version-history":[{"count":3,"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/pages\/678\/revisions"}],"predecessor-version":[{"id":851,"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=\/wp\/v2\/pages\/678\/revisions\/851"}],"wp:attachment":[{"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=678"}],"wp:term":[{"taxonomy":"wf_page_folders","embeddable":true,"href":"https:\/\/forms.leibniz-zmt.de\/Wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fwf_page_folders&post=678"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}